PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120502.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 160aa    MW: 17142.9 Da    PI: 9.5602
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120502.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001982104123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+Cg  F+    L  H+r+H
  XP_009120502.1  82 HPCPICGVEFPMGQALGGHMRRH 104
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.41E-537104No hitNo description
PfamPF139123.1E-103863IPR007087Zinc finger, C2H2
SMARTSM00355123961IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
PROSITE profilePS501579.68182109IPR007087Zinc finger, C2H2
SMARTSM003550.07982104IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-1182105IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MVAISEIKST VETTAANCLM LLSRVGQENV DGGSAKRVFT CKTCLKEFLS FQAWGGHRAS  60
HKKPNNENLS SLMKKTKASS SHPCPICGVE FPMGQALGGH MRRHRNESGG AGALVTRELL  120
SEAALTTLKK SSSGRLACLD LSLGMVENLN LKLELGRPVC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.8090.0bud| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1789810.0DQ178981.1 Brassica napus C2H2-type zinc finger protein (ZF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120502.11e-114PREDICTED: zinc finger protein ZAT12-like
SwissprotQ424101e-92ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLM4CE971e-114M4CE97_BRARP; Uncharacterized protein
STRINGBra002528.1-P1e-113(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.17e-94C2H2 family protein